Entry: as.ts.mcmc
Aliases: as.ts.msms
Keywords: ts utilities
Description: Coerce mcmc object to time series
URL: ../../../library/coda/html/as.ts.mcmc.html

Entry: autocorr.plot
Aliases: autocorr.plot
Keywords: hplot
Description: Plot autocorrelations for Markov Chains
URL: ../../../library/coda/html/autocorr.plot.html

Entry: autocorr
Aliases: autocorr
Keywords: ts
Description: Autocorrelation function for Markov chains
URL: ../../../library/coda/html/autocorr.html

Entry: change.tfoption
Aliases: change.tfoption
Keywords: utilities
Description: Interactively modify logical codamenu options.
URL: ../../../library/coda/html/change.tfoption.html

Entry: coda.global.assign
Aliases: coda.global.assign
Keywords: data
Description: Cross-platform assignment to global environment
URL: ../../../library/coda/html/coda.global.assign.html

Entry: coda.options
Aliases: coda.options print.coda.options .Coda.Options.Default
Keywords: utilities
Description: Options settings for the codamenu driver
URL: ../../../library/coda/html/coda.options.html

Entry: codamenu
Aliases: codamenu
Keywords: utilities
Description: Main menu driver for the coda package
URL: ../../../library/coda/html/codamenu.html

Entry: codamenu2
Aliases: codamenu.main codamenu.anal codamenu.diags codamenu.diags.autocorr codamenu.diags.crosscorr codamenu.diags.heidel codamenu.diags.raftery codamenu.diags.gelman codamenu.diags.geweke codamenu.options codamenu.options.data codamenu.options.diag codamenu.options.gelman codamenu.options.geweke.bin codamenu.options.geweke.win codamenu.options.heidel codamenu.options.plot codamenu.options.plot.kernel codamenu.options.plot.ps codamenu.options.raftery codamenu.options.stats tidy.up codamenu.ps codamenu.output.header
Keywords: utilities
Description: Submenus for the coda package
URL: ../../../library/coda/html/codamenu2.html

Entry: Cramer
Aliases: pcramer
Keywords: distribution
Description: The Cramer-von Mises Distribution
URL: ../../../library/coda/html/Cramer.html

Entry: crosscorr.plot
Aliases: crosscorr.plot
Keywords: hplot
Description: Plot image of correlation matrix
URL: ../../../library/coda/html/crosscorr.plot.html

Entry: crosscorr
Aliases: crosscorr
Keywords: multivariate array
Description: Cross correlations for MCMC output
URL: ../../../library/coda/html/crosscorr.html

Entry: densplot
Aliases: densplot
Keywords: hplot
Description: Probability density function estimate from MCMC output
URL: ../../../library/coda/html/densplot.html

Entry: gelman.diag
Aliases: gelman.diag gelman.mv.diag gelman.transform print.gelman.diag
Keywords: htest
Description: Gelman and Rubin's convergence diagnostic
URL: ../../../library/coda/html/gelman.diag.html

Entry: gelman.plot
Aliases: gelman.plot gelman.preplot
Keywords: hplot
Description: Gelman-Rubin-Brooks plot
URL: ../../../library/coda/html/gelman.plot.html

Entry: geweke.diag
Aliases: geweke.diag print.geweke.diag
Keywords: htest
Description: Geweke's convergence diagnostic
URL: ../../../library/coda/html/geweke.diag.html

Entry: geweke.plot
Aliases: geweke.plot
Keywords: hplot
Description: Geweke-Brooks plot
URL: ../../../library/coda/html/geweke.plot.html

Entry: heidel.diag
Aliases: heidel.diag print.heidel.diag
Keywords: htest
Description: Heidelberger and Welch's convergence diagnostic
URL: ../../../library/coda/html/heidel.diag.html

Entry: line
Aliases: line line.old
Keywords: datasets
Description: Simple linear regression example 
URL: ../../../library/coda/html/line.html

Entry: mcmc.convert
Aliases: as.matrix.mcmc as.matrix.mcmc.list as.array.mcmc.list as.mcmc.mcmc.list
Keywords: array
Description: Conversions of MCMC objects
URL: ../../../library/coda/html/mcmc.convert.html

Entry: mcmc.list
Aliases: mcmc.list as.mcmc.list as.mcmc.list.default is.mcmc.list plot.mcmc.list
Keywords: ts
Description: Replicated Markov Chain Monte Carlo Objects
URL: ../../../library/coda/html/mcmc.list.html

Entry: mcmc
Aliases: mcmc as.mcmc as.mcmc.default is.mcmc print.mcmc
Keywords: ts
Description: Markov Chain Monte Carlo Objects
URL: ../../../library/coda/html/mcmc.html

Entry: mcmc.subset
Aliases: [.mcmc [.mcmc.list
Keywords: ts
Description: Extract or replace parts of MCMC objects
URL: ../../../library/coda/html/mcmc.subset.html

Entry: mcpar
Aliases: mcpar
Keywords: ts
Description: Mcpar attribute of MCMC objects
URL: ../../../library/coda/html/mcpar.html

Entry: multi.menu
Aliases: multi.menu
Keywords: utilities
Description: Choose multiple options from a menu
URL: ../../../library/coda/html/multi.menu.html

Entry: nchain
Aliases: niter nvar nchain
Keywords: ts
Description: Dimensions of MCMC objects
URL: ../../../library/coda/html/nchain.html

Entry: plot.mcmc
Aliases: plot.mcmc
Keywords: hplot
Description: Summary plots of mcmc objects
URL: ../../../library/coda/html/plot.mcmc.html

Entry: raftery.diag
Aliases: raftery.diag print.raftery.diag
Keywords: htest
Description: Raftery and Lewis's diagnostic
URL: ../../../library/coda/html/raftery.diag.html

Entry: read.and.check
Aliases: read.and.check
Keywords: utilities
Description: Read data interactively and check that it satisfies conditions
URL: ../../../library/coda/html/read.and.check.html

Entry: read.bugs.interactive
Aliases: read.bugs.interactive
Keywords: file
Description: Read BUGS output files interactively
URL: ../../../library/coda/html/read.bugs.interactive.html

Entry: read.bugs
Aliases: read.bugs
Keywords: file
Description: Read BUGS output files
URL: ../../../library/coda/html/read.bugs.html

Entry: read.yesno
Aliases: read.yesno
Keywords: utilities
Description: Read logical values from the command line
URL: ../../../library/coda/html/read.yesno.html

Entry: set.mfrow
Aliases: set.mfrow
Keywords: dplot
Description: Set layout for graphical plots
URL: ../../../library/coda/html/set.mfrow.html

Entry: spectrum0
Aliases: spectrum0
Keywords: ts
Description: Estimate spectral density at zero
URL: ../../../library/coda/html/spectrum0.html

Entry: summary.mcmc
Aliases: summary.mcmc summary.mcmc.list print.summary.mcmc print.summary.mcmc.list
Keywords: univar
Description: Summary statistics for  Markov Chain Monte Carlo chains
URL: ../../../library/coda/html/summary.mcmc.html

Entry: thin
Aliases: thin
Keywords: ts
Description: Thinning interval
URL: ../../../library/coda/html/thin.html

Entry: time.mcmc
Aliases: time.mcmc start.mcmc end.mcmc frequency.mcmc thin.mcmc time.mcmc.list start.mcmc.list end.mcmc.list thin.mcmc.list
Keywords: ts
Description: Time attributes for mcmc objects
URL: ../../../library/coda/html/time.mcmc.html

Entry: traceplot
Aliases: traceplot
Keywords: hplot
Description: Trace plot of MCMC output
URL: ../../../library/coda/html/traceplot.html

Entry: upgrade.mcmc
Aliases: upgrade.mcmc
Keywords: ts
Description: Upgrade mcmc objects in obsolete format
URL: ../../../library/coda/html/upgrade.mcmc.html

Entry: varnames
Aliases: varnames varnames<- chanames chanames<-
Keywords: manip
Description: Named dimensions of MCMC objects
URL: ../../../library/coda/html/varnames.html

Entry: window.mcmc
Aliases: window.mcmc window.mcmc.list
Keywords: ts
Description: Time windows for mcmc objects
URL: ../../../library/coda/html/window.mcmc.html

